STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmDHypothetical protein; COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]; COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]; putative RNA methyltransferase RsmD family. (182 aa)    
Predicted Functional Partners:
sps1
COG0515 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms.
       0.808
ptc1
COG0631 Serine/threonine protein phosphatase [Signal transduction mechanisms].
  
    0.801
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.798
engC
Ribosome small subunit-dependent GTPase Eng C; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.786
rpe
COG0036 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].
       0.749
hsdM-4
COG0286 Type I restriction-modification system methyltransferase subunit [Defense mechanisms].
       0.601
BAQ54531.1
Predicted transmembrane protein.
       0.550
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.515
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.460
Your Current Organism:
Mycoplasma arginini
NCBI taxonomy Id: 2094
Other names: ATCC 23838, CIP 71.23, IFO 14476, M. arginini, MRL M1240/68, Mycoplasma leonis, NBRC 14476, NCTC 10129, strain G230
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