STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vacB-2S1 RNA binding domain protein; PRK05807, hypothetical protein, Provisional. (111 aa)    
Predicted Functional Partners:
pgi
COG0166 Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism].
       0.781
mdh
COG0039 Malate/lactate dehydrogenases [Energy production and conversion]; Belongs to the LDH/MDH superfamily.
       0.781
fecE
Alkylphosphonate ABC transporter ATP binding protein; COG0194 Guanylate kinase [Nucleotide transport and metabolism]; COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].
       0.627
phnE
Alkylphosphonate ABC transporter permease protein; COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism].
       0.470
BAQ54562.1
Alkylphosphonate ABC transporter substrate-binding component; Pfam06646, Mycoplasma_p37, High affinity transport system protein p37, This family consists of several high affinity transport system protein p37 sequences which are specific to Mycoplasma species. The p37 gene is part of an operon encoding two additional proteins which are highly similar to components of the periplasmic binding-protein-dependent transport systems of Gram-negative bacteria.It has been suggested that p37 is part of a homologous, high-affinity transport system in M. hyorhinis, a Gram-positive bacterium.
       0.470
Your Current Organism:
Mycoplasma arginini
NCBI taxonomy Id: 2094
Other names: ATCC 23838, CIP 71.23, IFO 14476, M. arginini, MRL M1240/68, Mycoplasma leonis, NBRC 14476, NCTC 10129, strain G230
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