STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pyn_34018Putative polygalacturonase. (455 aa)    
Predicted Functional Partners:
Pyn_36941
Pectinesterase.
  
  
 0.898
Pyn_18943
Pectinesterase.
  
  
 0.896
Pyn_37620
Pectinesterase; In the C-terminal section; belongs to the pectinesterase family.
  
  
  0.890
Pyn_21741
Pectate lyase.
     
 0.867
Pyn_16023
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family.
  
  
  0.854
Pyn_38037
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.852
Pyn_00251
Pectate lyase.
     
 0.845
Pyn_36067
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family.
  
  
 0.831
Pyn_12048
Pectinesterase.
     
 0.831
Pyn_27274
D-galacturonate reductase-like.
     
 0.827
Your Current Organism:
Prunus yedoensis
NCBI taxonomy Id: 2094558
Other names: P. yedoensis var. nudiflora, Prunus yedoensis var. nudiflora
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