STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pyn_25139Uncharacterized protein. (274 aa)    
Predicted Functional Partners:
Pyn_15711
Hydroxyproline O-arabinosyltransferase 1.
  
  
 
0.918
Pyn_17890
Uncharacterized protein.
  
  
 
0.918
Pyn_10323
Uncharacterized protein.
  
  
 
0.913
Pyn_38181
AP2-like ethylene-responsive transcription factor.
  
     0.487
Pyn_38533
Light-harvesting complex-like protein 3 isotype 1 chloroplastic.
  
     0.479
Pyn_12254
Uncharacterized protein.
  
     0.479
Pyn_38664
Beta-carotene hydroxylase.
  
     0.476
Pyn_22110
Light-harvesting complex-like protein 3 isotype 1 chloroplastic.
  
     0.461
Pyn_41059
Light-harvesting complex-like protein 3 isotype 1 chloroplastic.
  
     0.439
Pyn_37977
PsbP domain-containing protein 4 chloroplastic.
  
     0.433
Your Current Organism:
Prunus yedoensis
NCBI taxonomy Id: 2094558
Other names: P. yedoensis var. nudiflora, Prunus yedoensis var. nudiflora
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