STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pyn_08949DExH-box ATP-dependent RNA helicase DExH16 mitochondrial isoform X1. (571 aa)    
Predicted Functional Partners:
Pyn_33330
Exosome complex exonuclease RRP44 homolog A; Belongs to the RNR ribonuclease family.
   
 
 0.807
Pyn_30881
DIS3-like exonuclease 2 isoform X2.
   
 
 0.807
Pyn_15735
Ribonuclease II chloroplastic/mitochondrial.
   
 
 0.807
Pyn_12697
Exosome complex exonuclease RRP44 homolog A; Belongs to the RNR ribonuclease family.
   
 
 0.807
Pyn_03402
Ribonuclease II chloroplastic/mitochondrial.
   
 
 0.807
Pyn_16930
Polyribonucleotide nucleotidyltransferase 2 mitochondrial.
   
 
 0.532
Pyn_33588
Polyribonucleotide nucleotidyltransferase 2 mitochondrial.
   
 
 0.532
Pyn_40528
Zinc phosphodiesterase ELAC protein 2.
   
  
 0.475
Pyn_02469
Zinc phosphodiesterase ELAC protein 2 isoform X1.
   
  
 0.475
Pyn_03120
Uncharacterized protein.
      
 0.450
Your Current Organism:
Prunus yedoensis
NCBI taxonomy Id: 2094558
Other names: P. yedoensis var. nudiflora, Prunus yedoensis var. nudiflora
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.