STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pyn_0135060S ribosomal protein L13a-1. (283 aa)    
Predicted Functional Partners:
Pyn_01421
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.960
Pyn_19123
60S acidic ribosomal protein P1.
   
 0.958
Pyn_03966
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.957
Pyn_36731
60S ribosomal protein L35a-1.
   
 0.956
Pyn_19873
Ribosomal protein L5.
  
 0.947
Pyn_12222
Uncharacterized protein.
  
 0.936
Pyn_34499
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
  
 0.931
Pyn_33212
60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.926
Pyn_27312
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.924
Pyn_13488
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.924
Your Current Organism:
Prunus yedoensis
NCBI taxonomy Id: 2094558
Other names: P. yedoensis var. nudiflora, Prunus yedoensis var. nudiflora
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