STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pyn_01561Cathepsin B. (109 aa)    
Predicted Functional Partners:
Pyn_36607
UPF0235 protein.
    
   0.782
Pyn_04836
UPF0235 protein.
    
   0.782
Pyn_22897
UPF0235 protein.
    
   0.782
Pyn_26757
Vacuolar-processing enzyme-like.
   
 
 0.594
Pyn_20318
Vacuolar-processing enzyme.
   
 
 0.556
Pyn_01248
Vacuolar-processing enzyme.
   
 
 0.556
Pyn_19790
Uncharacterized protein.
      
 0.544
Pyn_33167
Calreticulin.
      
 0.542
Pyn_26022
Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Belongs to the GTP-binding elongation factor family. LepA subfamily.
      
 0.541
Pyn_33556
Protease Do-like 1 chloroplastic isoform X1.
   
  
 0.506
Your Current Organism:
Prunus yedoensis
NCBI taxonomy Id: 2094558
Other names: P. yedoensis var. nudiflora, Prunus yedoensis var. nudiflora
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.