STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pyn_09139Zinc finger CCCH domain-containing protein 44. (1023 aa)    
Predicted Functional Partners:
Pyn_15630
Chromatin structure-remodeling complex protein BSH.
   
 0.898
Pyn_14738
Uncharacterized protein.
   
 0.898
Pyn_14739
Dentin sialophosphoprotein.
   
 0.898
Pyn_07792
Chromatin structure-remodeling complex protein SYD isoform X3.
    
 0.831
Pyn_07791
Chromatin structure-remodeling complex protein SYD isoform X2.
    
 0.831
Pyn_38047
Eukaryotic translation initiation factor NCBP; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.809
Pyn_33185
High mobility group B protein 10 isoform X1.
   
 
 0.763
Pyn_01155
High mobility group B protein 10 isoform X1.
   
 
 0.763
Pyn_22140
Armadillo repeat-containing protein LFR.
    
 0.754
Pyn_39504
Armadillo repeat-containing protein LFR.
    
 0.754
Your Current Organism:
Prunus yedoensis
NCBI taxonomy Id: 2094558
Other names: P. yedoensis var. nudiflora, Prunus yedoensis var. nudiflora
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.