STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pyn_19845Protein transport protein Sec61 subunit alpha; Belongs to the SecY/SEC61-alpha family. (476 aa)    
Predicted Functional Partners:
Pyn_34499
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.997
Pyn_30542
Preprotein translocase subunit SCY1 chloroplastic; Belongs to the SecY/SEC61-alpha family.
  
 0.995
Pyn_09408
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.995
Pyn_30305
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.995
Pyn_02394
Preprotein translocase subunit SCY1 chloroplastic.
  
 0.995
Pyn_07690
Protein transport protein Sec61 subunit gamma.
   
 0.994
Pyn_19873
Ribosomal protein L5.
  
 
 0.994
Pyn_03138
50S ribosomal protein L5 chloroplastic.
  
 
 0.993
Pyn_21276
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.993
Pyn_35397
Uncharacterized protein.
   
 0.993
Your Current Organism:
Prunus yedoensis
NCBI taxonomy Id: 2094558
Other names: P. yedoensis var. nudiflora, Prunus yedoensis var. nudiflora
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.