STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA42532.1Fucose 4-O-acetylase. (369 aa)    
Predicted Functional Partners:
SDA42426.1
Undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.752
SDA42521.1
Glycosyl transferases group 1.
  
    0.485
SDA42509.1
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
       0.483
SDA42499.1
D-sedoheptulose 7-phosphate isomerase.
       0.477
SDA42543.1
Lipopolysaccharide cholinephosphotransferase.
       0.460
SDA42462.1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.428
SDA42478.1
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase.
       0.428
SDA42487.1
D-glycero-alpha-D-manno-heptose-7-phosphate kinase.
       0.428
Your Current Organism:
Allisonella histaminiformans
NCBI taxonomy Id: 209880
Other names: A. histaminiformans, ATCC BAA-610, Allisonella histaminiformans Garner et al. 2003, CCUG 48567, DSM 15230, strain MR2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.