STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA45091.1D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (245 aa)    
Predicted Functional Partners:
SDA45105.1
Hypothetical protein.
       0.773
SDA45116.1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
       0.737
SDA60946.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
  
 
0.696
SDA60784.1
Putative peptidoglycan binding domain-containing protein.
  
 
 0.678
SDA38525.1
Penicillin-binding protein 1A.
   
 
 0.657
SDA43350.1
Penicillin-binding protein 2.
 
 
 0.627
SDA54304.1
Serine/threonine protein kinase.
   
 
 0.499
SDA45001.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
 
   
 0.458
SDA45132.1
Zinc transporter, ZIP family.
       0.455
SDA54589.1
3D (Asp-Asp-Asp) domain-containing protein.
 
 
  0.446
Your Current Organism:
Allisonella histaminiformans
NCBI taxonomy Id: 209880
Other names: A. histaminiformans, ATCC BAA-610, Allisonella histaminiformans Garner et al. 2003, CCUG 48567, DSM 15230, strain MR2
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