STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA50261.1S-layer homology domain-containing protein. (417 aa)    
Predicted Functional Partners:
SDA48568.1
Protein of unknown function.
  
     0.774
SDA46290.1
Hypothetical protein.
  
     0.772
SDA47456.1
Hypothetical protein.
  
     0.772
SDA48556.1
RNase H-fold protein, predicted Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.771
SDA53561.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.766
SDA37339.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.764
SDA47467.1
Polysaccharide pyruvyl transferase CsaB.
  
     0.762
SDA48580.1
Lipopolysaccharide export system permease protein.
  
     0.757
SDA53613.1
Autotransporter translocation and assembly factor TamB.
  
     0.754
SDA53582.1
Beta-barrel assembly machine subunit BamA.
  
     0.737
Your Current Organism:
Allisonella histaminiformans
NCBI taxonomy Id: 209880
Other names: A. histaminiformans, ATCC BAA-610, Allisonella histaminiformans Garner et al. 2003, CCUG 48567, DSM 15230, strain MR2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.