STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA59048.1Outer membrane autotransporter barrel domain-containing protein. (308 aa)    
Predicted Functional Partners:
SDA53561.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
   0.659
SDA37193.1
Cell fate regulator YlbF, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family.
  
     0.644
SDA43821.1
Putative ATP-dependent endonuclease of the OLD family.
  
     0.627
SDA54960.1
heptose-I-phosphate ethanolaminephosphotransferase.
  
     0.625
SDA37339.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
   0.619
SDA56762.1
S-layer homology domain-containing protein.
  
     0.596
SDA52957.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.583
SDA58125.1
Protein of unknown function.
  
     0.575
SDA52173.1
Uncharacterized conserved protein YybS, DUF2232 family.
  
     0.571
SDA46290.1
Hypothetical protein.
  
     0.559
Your Current Organism:
Allisonella histaminiformans
NCBI taxonomy Id: 209880
Other names: A. histaminiformans, ATCC BAA-610, Allisonella histaminiformans Garner et al. 2003, CCUG 48567, DSM 15230, strain MR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.