Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AOD25025.1 | AOD25026.1 | MHMDBK_00011 | MHMDBK_00012 | Hypothetical protein. | Substrate-specific component FolT of folate ECF transporter; Identified by sequence similarity; putative. | 0.788 |
AOD25025.1 | AOD25027.1 | MHMDBK_00011 | MHMDBK_00013 | Hypothetical protein. | matE family protein; Identified by sequence similarity; putative. | 0.524 |
AOD25025.1 | AOD25029.1 | MHMDBK_00011 | MHMDBK_00015 | Hypothetical protein. | Hypothetical protein. | 0.406 |
AOD25025.1 | greA | MHMDBK_00011 | MHMDBK_00014 | Hypothetical protein. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.524 |
AOD25025.1 | valS | MHMDBK_00011 | MHMDBK_00010 | Hypothetical protein. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.800 |
AOD25026.1 | AOD25025.1 | MHMDBK_00012 | MHMDBK_00011 | Substrate-specific component FolT of folate ECF transporter; Identified by sequence similarity; putative. | Hypothetical protein. | 0.788 |
AOD25026.1 | AOD25027.1 | MHMDBK_00012 | MHMDBK_00013 | Substrate-specific component FolT of folate ECF transporter; Identified by sequence similarity; putative. | matE family protein; Identified by sequence similarity; putative. | 0.840 |
AOD25026.1 | AOD25029.1 | MHMDBK_00012 | MHMDBK_00015 | Substrate-specific component FolT of folate ECF transporter; Identified by sequence similarity; putative. | Hypothetical protein. | 0.424 |
AOD25026.1 | greA | MHMDBK_00012 | MHMDBK_00014 | Substrate-specific component FolT of folate ECF transporter; Identified by sequence similarity; putative. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.549 |
AOD25026.1 | valS | MHMDBK_00012 | MHMDBK_00010 | Substrate-specific component FolT of folate ECF transporter; Identified by sequence similarity; putative. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.832 |
AOD25027.1 | AOD25025.1 | MHMDBK_00013 | MHMDBK_00011 | matE family protein; Identified by sequence similarity; putative. | Hypothetical protein. | 0.524 |
AOD25027.1 | AOD25026.1 | MHMDBK_00013 | MHMDBK_00012 | matE family protein; Identified by sequence similarity; putative. | Substrate-specific component FolT of folate ECF transporter; Identified by sequence similarity; putative. | 0.840 |
AOD25027.1 | AOD25029.1 | MHMDBK_00013 | MHMDBK_00015 | matE family protein; Identified by sequence similarity; putative. | Hypothetical protein. | 0.625 |
AOD25027.1 | greA | MHMDBK_00013 | MHMDBK_00014 | matE family protein; Identified by sequence similarity; putative. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.817 |
AOD25027.1 | valS | MHMDBK_00013 | MHMDBK_00010 | matE family protein; Identified by sequence similarity; putative. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.559 |
AOD25029.1 | AOD25025.1 | MHMDBK_00015 | MHMDBK_00011 | Hypothetical protein. | Hypothetical protein. | 0.406 |
AOD25029.1 | AOD25026.1 | MHMDBK_00015 | MHMDBK_00012 | Hypothetical protein. | Substrate-specific component FolT of folate ECF transporter; Identified by sequence similarity; putative. | 0.424 |
AOD25029.1 | AOD25027.1 | MHMDBK_00015 | MHMDBK_00013 | Hypothetical protein. | matE family protein; Identified by sequence similarity; putative. | 0.625 |
AOD25029.1 | greA | MHMDBK_00015 | MHMDBK_00014 | Hypothetical protein. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.625 |
AOD25029.1 | valS | MHMDBK_00015 | MHMDBK_00010 | Hypothetical protein. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.406 |
page 1 of 2