STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsRibose-phosphate pyrophosphokinase; Identified by sequence similarity; putative. (326 aa)    
Predicted Functional Partners:
pdhD
Dihydrolipoamide dehydrogenase; Identified by sequence similarity; putative.
  
 0.995
pdhB
Pyruvate dehydrogenase E1 component beta subunit; Identified by sequence similarity; putative.
   
 0.990
tkt
Putative transketolase transmembrane protein; Identified by sequence similarity; putative; Belongs to the transketolase family.
   
 
 0.954
rpiB
Ribose-5-phosphate isomerase B; Identified by sequence similarity; putative.
    
 0.950
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
     
 0.913
pdhC
Dihydrolipoamide acetyltransferase; Identified by sequence similarity; putative.
   
 0.899
ksgA
16S ribosomal rRNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
 
 0.871
AOD25023.1
Dihydrolipoamide dehydrogenase; Identified by sequence similarity; putative.
   
 0.843
gidB
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.830
AOD25128.1
tatD family DNase; Identified by sequence similarity; putative.
       0.819
Your Current Organism:
Mycoplasma hyorhinis
NCBI taxonomy Id: 2100
Other names: ATCC 17981, ATCC 23234, Asterococcus hyorhinis, CIP 104968, DSM 25591, IFO 14858, M. hyorhinis, NBRC 14858, NCTC 10130, strain BTS 7, strain BTS-7, strain BTS7, strain PG42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.