STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepF-1Identified by sequence similarity; putative. (608 aa)    
Predicted Functional Partners:
oppB-1
Oligopeptide ABC transporter, permease protein; Identified by sequence similarity; putative.
  
    0.568
oppC-1
Oligopeptide ABC transporter, permease protein; Identified by sequence similarity; putative.
  
    0.562
oppD-1
Oligopeptide ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
  
    0.560
AOD25226.1
Oligopeptide transport ATP-binding protein OppF; Identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
  
    0.549
AOD25227.1
Hypothetical protein.
  
    0.536
tkt
Putative transketolase transmembrane protein; Identified by sequence similarity; putative; Belongs to the transketolase family.
       0.498
AOD25220.1
Hypothetical protein.
       0.498
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.498
AOD25228.1
Lipoprotein; Identified by sequence similarity; putative.
       0.493
pepA
Leucyl aminopeptidase; Identified by sequence similarity; putative; Belongs to the peptidase M17 family.
     
 0.456
Your Current Organism:
Mycoplasma hyorhinis
NCBI taxonomy Id: 2100
Other names: ATCC 17981, ATCC 23234, Asterococcus hyorhinis, CIP 104968, DSM 25591, IFO 14858, M. hyorhinis, NBRC 14858, NCTC 10130, strain BTS 7, strain BTS-7, strain BTS7, strain PG42
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.