STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifSAminotransferase, class V; Identified by sequence similarity; putative. (383 aa)    
Predicted Functional Partners:
nifU
Aminotransferase protein U-like protein; Identified by sequence similarity; putative.
  
 
 0.999
trxB
Thioredoxin reductase; Identified by sequence similarity; putative.
  
 
  0.911
AOD25280.1
Transcription termination factor; Identified by sequence similarity; putative.
       0.830
AOD25282.1
Putative rRNA methyltransferase; Identified by sequence similarity; putative.
       0.830
AOD25285.1
Ribosomal large subunit pseudouridine synthase B; Identified by sequence similarity; putative; Belongs to the pseudouridine synthase RsuA family.
       0.830
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
  
    0.785
AOD25281.1
Hypothetical protein.
       0.773
AOD25278.1
ABC transporter ATP-binding and permease protein; Identified by sequence similarity; putative.
  
    0.599
AOD25277.1
Hypothetical protein.
       0.561
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.548
Your Current Organism:
Mycoplasma hyorhinis
NCBI taxonomy Id: 2100
Other names: ATCC 17981, ATCC 23234, Asterococcus hyorhinis, CIP 104968, DSM 25591, IFO 14858, M. hyorhinis, NBRC 14858, NCTC 10130, strain BTS 7, strain BTS-7, strain BTS7, strain PG42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.