Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMU_132 | lplA | SMU_132 | SMU_131 | Putative hippurate amidohydrolase; Best Blastp Hit: sp|O34980|YTNL_BACSU HYPOTHETICAL 45.2 KDA PROTEIN IN DNAE-RIBR INTERGENIC REGION >gi|7448706|pir||E69640 hippurate hydrolase hipO - Bacillus subtilis >gi|2293256|gb|AAC00334.1| (AF008220) putative hippurate hydrolase [Bacillus subtilis] >gi|2635394|emb|CAB14889.1| (Z99118) hippurate hydrolase [Bacillus subtilis] >gi|2635413|emb|CAB14907.1| (Z99119) hippurate hydrolase [Bacillus subtilis]. | Best Blastp Hit: pir||G69830 lipoate-protein ligase homolog yhfJ - Bacillus subtilis >gi|2226243|emb|CAA74531.1| (Y14083) hypothetical protein [Bacillus subtilis] >gi|2633361|emb|CAB12865.1| (Z99109) similar to lipoate-protein ligase [Bacillus subtilis]. | 0.457 |
lplA | SMU_132 | SMU_131 | SMU_132 | Best Blastp Hit: pir||G69830 lipoate-protein ligase homolog yhfJ - Bacillus subtilis >gi|2226243|emb|CAA74531.1| (Y14083) hypothetical protein [Bacillus subtilis] >gi|2633361|emb|CAB12865.1| (Z99109) similar to lipoate-protein ligase [Bacillus subtilis]. | Putative hippurate amidohydrolase; Best Blastp Hit: sp|O34980|YTNL_BACSU HYPOTHETICAL 45.2 KDA PROTEIN IN DNAE-RIBR INTERGENIC REGION >gi|7448706|pir||E69640 hippurate hydrolase hipO - Bacillus subtilis >gi|2293256|gb|AAC00334.1| (AF008220) putative hippurate hydrolase [Bacillus subtilis] >gi|2635394|emb|CAB14889.1| (Z99118) hippurate hydrolase [Bacillus subtilis] >gi|2635413|emb|CAB14907.1| (Z99119) hippurate hydrolase [Bacillus subtilis]. | 0.457 |