STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMU_1546Conserved hypothetical protein; Best Blastp Hit: gb|AAD54224.1|AF143443_3 (AF143443) MesH [Leuconostoc mesenteroides]. (152 aa)    
Predicted Functional Partners:
SMU_1545c
Conserved hypothetical protein; Best Blastp Hit: emb|CAA68244.1| (X99978) citrulline cluster-linked gene [Lactobacillus plantarum].
       0.592
SMU_2160
Conserved hypothetical protein; Best Blastp Hit: gb|AAC14608.1| (U95840) transmembrane protein Tmp5 [Lactococcus lactis].
 
  
 0.557
dnlJ
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.408
SMU_1542c
Best Blastp Hit: pir||F69795 conserved hypothetical protein yerQ - Bacillus subtilis >gi|2632986|emb|CAB12492.1| (Z99107) similar to hypothetical proteins [Bacillus subtilis].
       0.405
Your Current Organism:
Streptococcus mutans
NCBI taxonomy Id: 210007
Other names: S. mutans UA159, Streptococcus mutans UA159, Streptococcus mutans str. UA159
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.