STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rs1130S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (127 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal protein L28; Best Blastp Hit: dbj|BAB06219.1| (AP001515) ribosomal protein L28 [Bacillus halodurans]; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.999
rs1
Best Blastp Hit: sp|P50889|RS1_LEULA 40S RIBOSOMAL PROTEIN S1 >gi|1565296|gb|AAB08978.1| (U24086) ribosomal protein S1 homolog; sequence specific DNA-binding protein [Leuconostoc lactis].
   
 0.999
rl19
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.999
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 0.999
rl33
Best Blastp Hit: sp|P23375|RL33_BACST 50S RIBOSOMAL PROTEIN L33 >gi|477793|pir||B48396 ribosomal protein L33 - Bacillus stearothermophilus >gi|240272|gb|AAB20569.1| BstL33=50S ribosomal subunit protein [Bacillus stearothermophilus, Peptide, 49 aa] >gi|243175|gb|AAB21086.1| ribosomal protein L33 [Bacillus stearothermophilus, Peptide, 49 aa] >gi|228174|prf||1718186B ribosomal protein L33 [Bacillus stearothermophilus]; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.999
rl1
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
  
 
 0.999
rl11
50S ribosomal L11 protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
 0.999
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 0.999
rpsI
Best Blastp Hit: sp|P07842|RS9_BACST 30S RIBOSOMAL PROTEIN S9 (BS10) >gi|70924|pir||R3BS9 ribosomal protein S9 - Bacillus stearothermophilus; Belongs to the universal ribosomal protein uS9 family.
 
 0.999
rs18
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.999
Your Current Organism:
Streptococcus mutans
NCBI taxonomy Id: 210007
Other names: S. mutans UA159, Streptococcus mutans UA159, Streptococcus mutans str. UA159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.