STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_27518Uncharacterized protein. (820 aa)    
Predicted Functional Partners:
CCACVL1_18230
RRM domain-containing protein.
   
 0.743
CCACVL1_03755
Nuclear cap-binding protein subunit 2.
    
 0.743
CCACVL1_26859
SPla/RYanodine receptor SPRY.
   
 0.688
CCACVL1_24579
MIF4G-like, type 3.
   
 0.672
CCACVL1_16759
DNA-directed RNA polymerase, subunit N/Rpb10.
   
 
  0.634
CCACVL1_14532
DNA-directed RNA polymerase, subunit N/Rpb10.
   
 
  0.634
CCACVL1_18155
Transcription initiation factor IIF, beta subunit.
   
 
  0.631
CCACVL1_08992
Transcription initiation factor IIF, beta subunit.
   
 
  0.631
CCACVL1_01318
Uncharacterized protein.
   
 
  0.629
CCACVL1_30088
Uncharacterized protein.
    
 0.503
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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