STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_25181Glycoside hydrolase, family 17; Belongs to the glycosyl hydrolase 17 family. (452 aa)    
Predicted Functional Partners:
CCACVL1_28922
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.693
CCACVL1_03562
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.693
CCACVL1_15247
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.684
CCACVL1_03179
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.684
CCACVL1_24721
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.680
CCACVL1_20808
Glycoside hydrolase, family 17; Belongs to the glycosyl hydrolase 17 family.
  
0.645
CCACVL1_25663
Peroxisome biogenesis protein 3-2.
    
 0.644
CCACVL1_10466
Acyl-CoA oxidase/dehydrogenase, type 1.
   
 0.636
CCACVL1_24698
Zinc finger, U1-type.
     
 0.635
CCACVL1_10810
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
     
 0.628
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.