STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_25117Putative Zinc finger, BED-type. (725 aa)    
Predicted Functional Partners:
CCACVL1_18417
SWIM-type domain-containing protein.
  
 
   0.552
CCACVL1_27828
Putative Zinc finger, BED-type.
  
 
 
 0.529
CCACVL1_28537
Uncharacterized protein.
  
 
   0.521
CCACVL1_12542
Putative Zinc finger, BED-type.
  
 
 
 0.521
CCACVL1_22040
Phox/Bem1p.
  
 
   0.517
CCACVL1_16058
Uncharacterized protein.
  
 
   0.512
CCACVL1_28673
Phox/Bem1p.
  
 
   0.506
CCACVL1_09229
SWIM-type domain-containing protein.
  
 
   0.505
CCACVL1_24395
Dimer_Tnp_hAT domain-containing protein.
  
 
   0.503
CCACVL1_21506
Zinc finger, PMZ-type.
  
 
   0.494
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.