STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_25114LOB domain-containing protein. (226 aa)    
Predicted Functional Partners:
CCACVL1_25811
Small GTPase superfamily, ARF/SAR type.
  
     0.527
CCACVL1_18665
LOB domain-containing protein.
  
     0.524
CCACVL1_01936
Uncharacterized protein.
  
     0.524
CCACVL1_09604
C2H2-type domain-containing protein.
  
     0.521
CCACVL1_29219
Vacuolar protein sorting-associated protein 26.
  
     0.520
CCACVL1_29608
Calmodulin binding protein-like protein.
  
     0.517
CCACVL1_29859
Uncharacterized protein.
  
     0.516
CCACVL1_30281
GDP-fucose protein O-fucosyltransferase.
  
     0.513
CCACVL1_29005
Uncharacterized protein.
  
     0.513
CCACVL1_13627
Porin/voltage-dependent anion-selective channel protein.
  
     0.513
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.