STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_24469Uncharacterized protein. (431 aa)    
Predicted Functional Partners:
CCACVL1_26754
Ribosomal protein L29.
  
 
   0.511
CCACVL1_26935
Tetraspanin; Belongs to the tetraspanin (TM4SF) family.
  
     0.458
CCACVL1_27730
Ribosomal protein L21e.
   
   0.444
CCACVL1_00276
Ribosomal protein L21e.
   
   0.444
CCACVL1_21089
MACPF domain-containing protein.
  
     0.441
CCACVL1_18503
GDP-fucose protein O-fucosyltransferase.
  
     0.439
CCACVL1_00773
Ribosomal protein L13, eukaryotic/archaeal; Belongs to the universal ribosomal protein uL13 family.
   
   0.433
CCACVL1_24628
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
  
     0.432
CCACVL1_18373
Tetraspanin/Peripherin.
  
     0.425
CCACVL1_03167
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily.
  
 
   0.422
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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