STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_23079HTH myb-type domain-containing protein. (360 aa)    
Predicted Functional Partners:
CCACVL1_30623
Elf4 domain-containing protein.
   
 
 0.600
CCACVL1_12464
Gigantea protein.
    
 0.581
CCACVL1_20938
Protein EARLY FLOWERING 3-like protein.
   
 
 0.527
CCACVL1_18584
Uncharacterized protein.
   
 
 0.527
CCACVL1_01635
HTH myb-type domain-containing protein.
    
 
 0.489
CCACVL1_06894
Uncharacterized protein.
   
  
 0.482
CCACVL1_03630
PAS domain-containing protein.
    
 0.468
CCACVL1_23938
PAS domain-containing protein.
   
 0.453
CCACVL1_15137
Uncharacterized protein.
      
 0.426
CCACVL1_22901
Zinc finger, GATA-type.
      
 0.424
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.