STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_23029IQ motif, EF-hand binding site. (483 aa)    
Predicted Functional Partners:
CCACVL1_21051
Cytochrome P450.
  
     0.464
CCACVL1_10356
Putative transcription factor.
  
     0.453
CCACVL1_07150
Transferase.
  
     0.408
CCACVL1_25856
TPX2 domain-containing protein.
  
     0.407
CCACVL1_04332
Dormancyauxin associated.
  
     0.406
CCACVL1_30321
BHLH domain-containing protein.
  
     0.405
CCACVL1_26541
Uncharacterized protein.
  
     0.404
CCACVL1_21805
Late embryogenesis abundant protein, LEA-14.
  
     0.400
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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