STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_20341Uncharacterized protein. (230 aa)    
Predicted Functional Partners:
CCACVL1_14525
F-box domain-containing protein.
  
     0.492
CCACVL1_14524
Kelch repeat type 1.
  
     0.486
CCACVL1_29496
GTD-binding domain-containing protein.
  
     0.458
CCACVL1_22568
Uncharacterized protein.
  
     0.452
CCACVL1_09051
Uncharacterized protein.
  
     0.440
CCACVL1_11406
F-box domain-containing protein.
  
     0.436
CCACVL1_00174
Uncharacterized protein.
  
     0.434
CCACVL1_08894
GYF domain-containing protein.
  
     0.432
CCACVL1_02948
Uncharacterized protein.
  
     0.432
CCACVL1_04546
DUF4378 domain-containing protein.
  
     0.430
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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