STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_20157Disease resistance protein; Belongs to the disease resistance NB-LRR family. (1058 aa)    
Predicted Functional Partners:
CCACVL1_09405
Pathogenic type III effector avirulence factor Avr cleavage site.
    
  0.795
CCACVL1_16553
Disease resistance protein; Belongs to the disease resistance NB-LRR family.
  
  
 
0.466
CCACVL1_20951
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
  0.459
CCACVL1_19364
PGG domain-containing protein.
  
 
   0.434
CCACVL1_27125
Disease resistance protein; Belongs to the disease resistance NB-LRR family.
  
  
 
0.416
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.