STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_16228Uncharacterized protein. (253 aa)    
Predicted Functional Partners:
CCACVL1_23088
PWI domain-containing protein.
    
 0.592
CCACVL1_11368
SWAP/Surp.
    
 
 0.589
CCACVL1_11847
Uncharacterized protein.
    
 0.534
CCACVL1_24069
Transcription factor, SBP-box.
  
     0.480
CCACVL1_00572
Transcription factor, SBP-box.
  
     0.465
CCACVL1_19597
Transcription factor, SBP-box.
  
 
  0.464
CCACVL1_21039
Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid.
  
     0.449
CCACVL1_23294
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
  0.423
CCACVL1_11809
HPt domain-containing protein.
  
     0.420
CCACVL1_12106
Glycos_transf_N domain-containing protein.
    
  0.413
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.