STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_15799LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052. (420 aa)    
Predicted Functional Partners:
CCACVL1_11902
Armadillo-like helical.
    
 0.487
CCACVL1_15388
Phosphoadenosine phosphosulfate reductase.
    
 0.470
CCACVL1_16531
Uncharacterized protein.
   
 0.429
CCACVL1_16532
WD_REPEATS_REGION domain-containing protein.
   
 0.429
CCACVL1_14018
WD_REPEATS_REGION domain-containing protein.
   
 0.429
CCACVL1_11024
WD_REPEATS_REGION domain-containing protein.
   
 0.429
CCACVL1_04021
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
  0.426
CCACVL1_07304
Uncharacterized protein.
      
 0.420
CCACVL1_13883
SNF2-related protein.
    
 0.419
CCACVL1_15038
Las1-like protein.
    
  0.412
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.