CCACVL1_15325 protein (Corchorus capsularis)

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Predicted Interactions

gene neighborhood

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textmining

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Score

CCACVL1_15325

Uncharacterized protein. (436 aa)

Predicted Functional Partners:

CCACVL1_08414

0.982

CCACVL1_12181

0.977

CCACVL1_26202

0.969

CCACVL1_03750

0.967

CCACVL1_11513

0.955

CCACVL1_11502

0.952

CCACVL1_04742

0.947

CCACVL1_25174

0.940

CCACVL1_23299

0.940

CCACVL1_07767

0.938

Your Current Organism:

Corchorus capsularis

NCBI taxonomy Id: 210143
Other names: C. capsularis, jute

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCACVL1_03750	CCACVL1_04742	A0A1R3JXW4	A0A1R3JPU0	LRRcap domain-containing protein.	Sm domain-containing protein.	0.992
CCACVL1_03750	CCACVL1_07767	A0A1R3JXW4	A0A1R3J460	LRRcap domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.992
CCACVL1_03750	CCACVL1_08414	A0A1R3JXW4	A0A1R3J0N9	LRRcap domain-containing protein.	Matrin-type domain-containing protein.	0.994
CCACVL1_03750	CCACVL1_11502	A0A1R3JXW4	A0A1R3IKV5	LRRcap domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.983
CCACVL1_03750	CCACVL1_11513	A0A1R3JXW4	A0A1R3IKS2	LRRcap domain-containing protein.	Sm domain-containing protein.	0.992
CCACVL1_03750	CCACVL1_12181	A0A1R3JXW4	A0A1R3IGV2	LRRcap domain-containing protein.	Zinc finger, U1-type.	0.989
CCACVL1_03750	CCACVL1_15325	A0A1R3JXW4	A0A1R3I2P8	LRRcap domain-containing protein.	Uncharacterized protein.	0.967
CCACVL1_03750	CCACVL1_23299	A0A1R3JXW4	A0A1R3GUH2	LRRcap domain-containing protein.	Uncharacterized protein.	0.979
CCACVL1_03750	CCACVL1_25174	A0A1R3JXW4	A0A1R3GLQ7	LRRcap domain-containing protein.	Uncharacterized protein.	0.979
CCACVL1_03750	CCACVL1_26202	A0A1R3JXW4	A0A1R3GFM5	LRRcap domain-containing protein.	Uncharacterized protein.	0.990
CCACVL1_04742	CCACVL1_03750	A0A1R3JPU0	A0A1R3JXW4	Sm domain-containing protein.	LRRcap domain-containing protein.	0.992
CCACVL1_04742	CCACVL1_07767	A0A1R3JPU0	A0A1R3J460	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.999
CCACVL1_04742	CCACVL1_08414	A0A1R3JPU0	A0A1R3J0N9	Sm domain-containing protein.	Matrin-type domain-containing protein.	0.987
CCACVL1_04742	CCACVL1_11502	A0A1R3JPU0	A0A1R3IKV5	Sm domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.989
CCACVL1_04742	CCACVL1_11513	A0A1R3JPU0	A0A1R3IKS2	Sm domain-containing protein.	Sm domain-containing protein.	0.999
CCACVL1_04742	CCACVL1_12181	A0A1R3JPU0	A0A1R3IGV2	Sm domain-containing protein.	Zinc finger, U1-type.	0.978
CCACVL1_04742	CCACVL1_15325	A0A1R3JPU0	A0A1R3I2P8	Sm domain-containing protein.	Uncharacterized protein.	0.947
CCACVL1_04742	CCACVL1_23299	A0A1R3JPU0	A0A1R3GUH2	Sm domain-containing protein.	Uncharacterized protein.	0.970
CCACVL1_04742	CCACVL1_25174	A0A1R3JPU0	A0A1R3GLQ7	Sm domain-containing protein.	Uncharacterized protein.	0.970
CCACVL1_04742	CCACVL1_26202	A0A1R3JPU0	A0A1R3GFM5	Sm domain-containing protein.	Uncharacterized protein.	0.982