STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_12998F-box domain-containing protein. (423 aa)    
Predicted Functional Partners:
CCACVL1_09034
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
 0.607
CCACVL1_27122
VQ motif-containing protein.
  
     0.483
CCACVL1_15296
Ubiquitin-protein ligase 7.
  
 
   0.468
CCACVL1_18952
Remorin_C domain-containing protein.
  
     0.467
CCACVL1_08886
Uncharacterized protein.
  
     0.463
CCACVL1_21430
Uncharacterized protein.
  
     0.457
CCACVL1_11748
Pentatricopeptide repeat-containing protein.
  
     0.451
CCACVL1_07708
Uncharacterized protein.
  
     0.442
CCACVL1_27084
Uncharacterized protein.
  
     0.435
CCACVL1_03083
No apical meristem (NAM) protein.
  
 
  0.432
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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