STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_09849C-5 cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (473 aa)    
Predicted Functional Partners:
CCACVL1_21215
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.908
CCACVL1_23264
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.
    
 0.905
CCACVL1_30800
Tetratricopeptide-like helical.
    
 0.904
CCACVL1_07247
Transport protein particle (TRAPP) component.
    
 0.903
CCACVL1_08639
Sedlin.
    
 0.902
CCACVL1_24923
Uncharacterized protein.
   
 0.834
CCACVL1_07400
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
 
 
0.829
CCACVL1_10577
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.824
CCACVL1_10328
GDP dissociation inhibitor.
    
 0.824
CCACVL1_28086
Photosystem I PsaH, reaction centre subunit VI.
   
 
 0.814
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.