STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_08691Metal-dependent protein hydrolase. (380 aa)    
Predicted Functional Partners:
CCACVL1_10165
Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.
   
    0.776
CCACVL1_16842
Uncharacterized protein.
   
    0.708
CCACVL1_02012
4Fe-4S ferredoxin-type domain-containing protein.
   
    0.708
CCACVL1_13285
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
    0.600
CCACVL1_26189
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
   
    0.596
CCACVL1_14951
FAD_binding_2 domain-containing protein.
   
    0.596
CCACVL1_12823
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
   
    0.596
CCACVL1_02713
NADH-quinone oxidoreductase, subunit D.
   
    0.538
CCACVL1_00923
NADH-quinone oxidoreductase, subunit D; Belongs to the complex I 49 kDa subunit family.
   
    0.538
CCACVL1_00938
Uncharacterized protein.
   
    0.538
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.