STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_03580Polyprenyl synthetase. (99 aa)    
Predicted Functional Partners:
CCACVL1_06957
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.
  
 0.913
CCACVL1_16773
Squalene/phytoene synthase.
  
 0.899
CCACVL1_14717
Nudix hydrolase domain-containing protein.
  
 
 0.889
CCACVL1_18958
Polyprenyl synthetase.
    
 0.871
CCACVL1_20975
Lipase, GDSL.
   
 
 0.870
CCACVL1_17135
LytB protein.
    
 0.869
CCACVL1_12805
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
   
 0.845
CCACVL1_26228
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.839
CCACVL1_16562
Polyprenyl synthetase.
    
 0.818
CCACVL1_13216
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.816
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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