STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_02093DNA-directed RNA polymerase, RBP11-like protein. (116 aa)    
Predicted Functional Partners:
CCACVL1_26878
RNA polymerase II, Rpb4.
   
 0.999
CCACVL1_21397
RNA polymerase, Rpb8; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.999
CCACVL1_17006
DNA-directed RNA polymerase, RBP11-like protein.
   
 0.999
CCACVL1_09868
Zinc finger, RING-type.
   
 0.999
CCACVL1_16759
DNA-directed RNA polymerase, subunit N/Rpb10.
   
 0.997
CCACVL1_14532
DNA-directed RNA polymerase, subunit N/Rpb10.
   
 0.997
CCACVL1_11202
DNA-directed RNA polymerase, RBP11-like protein.
   
 0.994
CCACVL1_17904
High potential iron-sulfur protein.
   
 0.993
CCACVL1_27152
DNA ligase.
    
  0.992
CCACVL1_15933
RNA polymerase archaeal subunit P/eukaryotic subunit RPC10.
   
 0.991
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.