STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_01739WD_REPEATS_REGION domain-containing protein. (380 aa)    
Predicted Functional Partners:
CCACVL1_17348
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
  
 
 0.915
CCACVL1_18963
Uncharacterized protein.
   
  0.744
CCACVL1_16532
WD_REPEATS_REGION domain-containing protein.
  
    0.634
CCACVL1_14018
WD_REPEATS_REGION domain-containing protein.
  
    0.633
CCACVL1_11041
WD_REPEATS_REGION domain-containing protein.
   
    0.607
CCACVL1_14347
Tetratricopeptide-like helical.
   
    0.597
CCACVL1_03728
Tetratricopeptide-like helical.
   
    0.597
CCACVL1_03727
Tetratricopeptide repeat-containing protein.
   
    0.597
CCACVL1_27931
WD_REPEATS_REGION domain-containing protein.
   
  
0.596
CCACVL1_22249
Ribosome biogenesis protein Nop16.
   
    0.593
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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