STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE3AUbiquitin-protein ligase E3A. (923 aa)    
Predicted Functional Partners:
ube2l3
Ubiquitin conjugating enzyme E2 L3.
   
 0.952
LOC114448526
26S proteasome non-ATPase regulatory subunit 4.
    
 
 0.916
LOC114449111
26S proteasome non-ATPase regulatory subunit 4-like.
    
 
 0.916
ctnnb1
Catenin beta 1.
    
 0.913
lrrc1
Leucine rich repeat containing 1.
    
 0.889
scrib
Scribble planar cell polarity protein.
    
 0.889
psmd14
Proteasome 26S subunit, non-ATPase 14.
    
 
 0.888
nfx1
Nuclear transcription factor, X-box binding 1.
     
 0.863
nfxl1
Nuclear transcription factor, X-box binding like 1.
     
 0.863
LOC114441255
Hamartin-like.
    
 0.858
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.