STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmod1Leiomodin 1. (666 aa)    
Predicted Functional Partners:
gps1
G protein pathway suppressor 1.
    
  0.813
cops3
COP9 signalosome subunit 3.
    
  0.811
hspa5
Heat shock protein family A (Hsp70) member 5.
    
  0.799
cops5
COP9 signalosome subunit 5.
    
 0.780
cops7a
COP9 signalosome subunit 7A.
    
  0.779
LOC114445794
Angiomotin-like.
    
  0.777
ENSPRNP00000004706
annotation not available
    
  0.765
COPS6
COP9 signalosome subunit 6.
    
  0.762
LOC114426301
Myosin light chain 1, skeletal muscle isoform.
   
 
 0.757
ENSPRNP00000022617
Nebulin.
   
 0.741
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.