STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps26aVPS26, retromer complex component A. (357 aa)    
Predicted Functional Partners:
vps29
VPS29 retromer complex component.
   
 0.999
vps35
VPS35 retromer complex component.
   
 0.999
tbc1d5
TBC1 domain family member 5.
   
 0.993
LOC114431537
Sorting nexin-27-like.
   
 0.988
SNX27
Sorting nexin 27.
   
 0.988
snx8
Sorting nexin 8.
    
 0.978
snx3
Sorting nexin 3.
    
 0.977
snx12
Sorting nexin 12.
    
 0.971
snx2
Sorting nexin 2.
   
 0.970
entr1
Endosome associated trafficking regulator 1.
    
 0.962
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.