STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttll1Tubulin tyrosine ligase like 1. (432 aa)    
Predicted Functional Partners:
LRRC49
Leucine rich repeat containing 49.
    
 0.928
tpgs2
Tubulin polyglutamylase complex subunit 2.
   
 0.918
nicn1
Nicolin 1.
   
 0.907
LOC114437789
Enhancer of mRNA-decapping protein 3-like.
    
 
 0.859
edc3
Enhancer of mRNA decapping 3.
    
 
 0.859
nudt12
Nudix hydrolase 12.
   
  0.851
tbc1d19
TBC1 domain family member 19.
   
 
 0.795
c19h11orf49
Chromosome 19 C11orf49 homolog.
    
 
 0.759
dcp2
Decapping mRNA 2.
    
 
 0.740
dcp1b
Decapping mRNA 1B.
    
 
 0.727
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.