mcat protein (Parambassis ranga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mcat

malonyl-CoA-acyl carrier protein transacylase. (387 aa)

Predicted Functional Partners:

oxsm

0.999

ndufab1

0.998

ENSPRNP00000034389

0.998

mrps16

0.973

fasn

0.971

pcca

0.966

mccc1

0.966

nelfcd

0.966

LOC114453409

0.965

LOC114453491

0.965

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPRNP00000034389	LOC114453409	ENSPRNP00000034389	ENSPRNP00000042073	annotation not available	Highly reducing polyketide synthase sorA-like.	0.833
ENSPRNP00000034389	LOC114453491	ENSPRNP00000034389	ENSPRNP00000042081	annotation not available	Highly reducing polyketide synthase 40-like.	0.833
ENSPRNP00000034389	fasn	ENSPRNP00000034389	ENSPRNP00000037870	annotation not available	Fatty acid synthase.	0.833
ENSPRNP00000034389	mcat	ENSPRNP00000034389	ENSPRNP00000001146	annotation not available	malonyl-CoA-acyl carrier protein transacylase.	0.998
ENSPRNP00000034389	mccc1	ENSPRNP00000034389	ENSPRNP00000045672	annotation not available	methylcrotonoyl-CoA carboxylase 1.	0.820
ENSPRNP00000034389	mrps16	ENSPRNP00000034389	ENSPRNP00000045166	annotation not available	Mitochondrial ribosomal protein S16.	0.785
ENSPRNP00000034389	nelfcd	ENSPRNP00000034389	ENSPRNP00000057192	annotation not available	Negative elongation factor complex member C/D.	0.820
ENSPRNP00000034389	oxsm	ENSPRNP00000034389	ENSPRNP00000017917	annotation not available	3-oxoacyl-ACP synthase, mitochondrial.	0.997
ENSPRNP00000034389	pcca	ENSPRNP00000034389	ENSPRNP00000012311	annotation not available	propionyl-CoA carboxylase subunit alpha.	0.820
LOC114453409	ENSPRNP00000034389	ENSPRNP00000042073	ENSPRNP00000034389	Highly reducing polyketide synthase sorA-like.	annotation not available	0.833
LOC114453409	mcat	ENSPRNP00000042073	ENSPRNP00000001146	Highly reducing polyketide synthase sorA-like.	malonyl-CoA-acyl carrier protein transacylase.	0.965
LOC114453409	mccc1	ENSPRNP00000042073	ENSPRNP00000045672	Highly reducing polyketide synthase sorA-like.	methylcrotonoyl-CoA carboxylase 1.	0.675
LOC114453409	ndufab1	ENSPRNP00000042073	ENSPRNP00000012853	Highly reducing polyketide synthase sorA-like.	NADH:ubiquinone oxidoreductase subunit AB1.	0.833
LOC114453409	nelfcd	ENSPRNP00000042073	ENSPRNP00000057192	Highly reducing polyketide synthase sorA-like.	Negative elongation factor complex member C/D.	0.675
LOC114453409	oxsm	ENSPRNP00000042073	ENSPRNP00000017917	Highly reducing polyketide synthase sorA-like.	3-oxoacyl-ACP synthase, mitochondrial.	0.899
LOC114453409	pcca	ENSPRNP00000042073	ENSPRNP00000012311	Highly reducing polyketide synthase sorA-like.	propionyl-CoA carboxylase subunit alpha.	0.675
LOC114453491	ENSPRNP00000034389	ENSPRNP00000042081	ENSPRNP00000034389	Highly reducing polyketide synthase 40-like.	annotation not available	0.833
LOC114453491	mcat	ENSPRNP00000042081	ENSPRNP00000001146	Highly reducing polyketide synthase 40-like.	malonyl-CoA-acyl carrier protein transacylase.	0.965
LOC114453491	mccc1	ENSPRNP00000042081	ENSPRNP00000045672	Highly reducing polyketide synthase 40-like.	methylcrotonoyl-CoA carboxylase 1.	0.675
LOC114453491	ndufab1	ENSPRNP00000042081	ENSPRNP00000012853	Highly reducing polyketide synthase 40-like.	NADH:ubiquinone oxidoreductase subunit AB1.	0.833