STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114432613Casein kinase II subunit beta. (215 aa)    
Predicted Functional Partners:
rrp7a
Ribosomal RNA processing 7 homolog A.
    
 0.986
nol6
Nucleolar protein 6.
   
 0.984
ddx10
DEAD-box helicase 10.
   
  0.977
noc4l
Nucleolar complex associated 4 homolog.
    
  0.975
wdr46
WD repeat domain 46.
    
  0.975
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
  0.975
utp6
UTP6 small subunit processome component.
    
  0.975
utp11
UTP11 small subunit processome component.
    
  0.975
fcf1
FCF1 rRNA-processing protein.
    
  0.975
LOC114431828
Ribosomal RNA processing protein 36 homolog.
    
  0.975
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.