STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prrt1Proline rich transmembrane protein 1. (241 aa)    
Predicted Functional Partners:
mars1
methionyl-tRNA synthetase 1.
   
 0.665
birc6
Baculoviral IAP repeat containing 6.
   
 0.645
traf7
TNF receptor associated factor 7.
    
  0.643
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.631
gak
Cyclin G associated kinase.
   
 0.620
rps3
Ribosomal protein S3.
    
 0.616
eci2
enoyl-CoA delta isomerase 2.
    
  0.615
mdh2
Malate dehydrogenase 2.
  
  0.614
pla2g4a
Phospholipase A2 group IVA.
    
 0.606
ripk4
Receptor interacting serine/threonine kinase 4.
   
 0.601
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.