STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc59Coiled-coil domain containing 59. (254 aa)    
Predicted Functional Partners:
pop4
POP4 homolog, ribonuclease P/MRP subunit.
   
 
  0.910
pop5
POP5 homolog, ribonuclease P/MRP subunit.
   
 
  0.896
llph
LLP homolog, long-term synaptic facilitation factor.
   
    0.870
rpp30
Ribonuclease P/MRP subunit p30.
   
 
  0.827
crebzf
CREB/ATF bZIP transcription factor.
   
 
  0.790
las1l
LAS1 like ribosome biogenesis factor.
   
 
  0.790
optn
Optineurin.
    
  0.654
ikbkg
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
  0.654
ENSPRNP00000016683
Ribonuclease P/MRP 25 subunit-like.
   
 
  0.610
ENSPRNP00000021101
annotation not available
   
 
  0.610
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.