STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114438598Sodium-dependent lysophosphatidylcholine symporter 1-like. (569 aa)    
Predicted Functional Partners:
tyms
Thymidylate synthetase.
    
  0.740
tk1
Thymidine kinase 1.
    
  0.729
cstf3
Cleavage stimulation factor subunit 3.
    
  0.714
ENSPRNP00000011360
annotation not available
    
 0.647
LOC114448015
Glyceraldehyde-3-phosphate dehydrogenase 2.
    
 0.647
LOC114449667
Glyceraldehyde-3-phosphate dehydrogenase-like.
    
 0.647
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.647
LOC114445400
Ribonucleoside-diphosphate reductase large subunit.
    
  0.596
LOC114445813
Ribonucleoside-diphosphate reductase large subunit-like.
    
  0.596
cmpk2
Cytidine/uridine monophosphate kinase 2.
    
 0.590
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.