Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000001302Syntaphilin a. (378 aa)    
Predicted Functional Partners:
espl1
Extra spindle pole bodies like 1, separase.
     
  0.693
LOC114446691
Trafficking kinesin-binding protein 1-like.
      
 0.671
smc3
Structural maintenance of chromosomes 3.
     
  0.532
ENSPRNP00000001303
annotation not available
     
  0.499
ENSPRNP00000001304
annotation not available
     
  0.499
LOC114449086
Double-strand-break repair protein rad21 homolog A-like.
     
  0.499
rad21
RAD21 cohesin complex component.
     
  0.499
smc1a
Structural maintenance of chromosomes 1A.
     
  0.485
LOC114451717
Structural maintenance of chromosomes protein 1B-like.
     
  0.485
trak2
Trafficking kinesin protein 2.
      
 0.424
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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