STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc23Leucine rich repeat containing 23. (305 aa)    
Predicted Functional Partners:
ENSPRNP00000006976
Netrin g1a.
    
 0.745
ENSPRNP00000055352
Vav 3 guanine nucleotide exchange factor b.
    
 0.745
ENSPRNP00000004910
annotation not available
    
  0.743
LOC114427530
Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like.
   
 0.735
LOC114451580
Serine/threonine-protein phosphatase alpha-2 isoform-like.
   
 0.735
LOC114440612
Serine/threonine-protein phosphatase alpha-2 isoform-like.
   
 0.735
LOC114428839
Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like.
   
 0.735
ppp1cc
Protein phosphatase 1 catalytic subunit gamma.
   
 0.735
PPP1CB
Serine/threonine-protein phosphatase PP1-beta catalytic subunit.
   
 0.735
ENSPRNP00000005003
annotation not available
    
  0.729
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.