STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114438818Transmembrane protein 240-like. (175 aa)    
Predicted Functional Partners:
cpsf2
Cleavage and polyadenylation specific factor 2.
   
 0.987
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.986
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.986
fip1l1
Factor interacting with PAPOLA and CPSF1.
    
 0.985
WDR33
WD repeat domain 33.
    
 0.985
sympk
Symplekin.
   
 0.985
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.984
papolg
poly(A) polymerase gamma.
    
 0.982
cstf2
Cleavage stimulation factor subunit 2.
   
 0.979
polr2a
RNA polymerase II subunit A.
    
 0.969
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.